Some tips and notes that may be useful when working with the included packages.
Importing and processing spectral and image data with pavo
: A introduction to importing and process spectral data and images (from the vignette).
Batch importing spectral data and metadata with lightr
: pavo
uses lightr
for basic spectral importing, but when more complex parsing is required, or you also want to extract spectral metadata, it’s best to work directly with lightr
. This is a brief introduction (from the vignette).
Analysing spectral and spatial (image) data with pavo
: A detailed overview of the spectral and image-based analyses available in pavo (from the vignette).
Renormalising spectral data with a custom reference: In extreme cases, it may be necessary to use low-level parsers to manually normalise spectra, which lightr
provides access to (from the vignette).
A comparison of spectral parsing with lightr
and ‘official’ software: A brief comparison of lightr
’s parsers and their official counterparts (from the vignette).